Biological Sciences, School of

[ undergraduate program | courses | faculty ]

STUDENT AND INSTRUCTIONAL SERVICES OFFICE
Pacific Hall, First Floor
(858) 534-0557

FINANCIAL AND ADMINISTRATIVE OFFICES
Urey Hall Annex
DEAN’S OFFICE
Natural Sciences Building, Sixth Floor
http://biology.ucsd.edu/

All courses, faculty listings, and curricular and degree requirements described herein are subject to change or deletion without notice.

Contiguous Bachelor’s/Master’s Degree Program

A contiguous program leading to a bachelor of science and a master of science in biology is offered to those undergraduate students who are enrolled in any of the major programs offered by the School of Biological Sciences or the Ecology, Behavior, and Evolution major in the Environmental Systems Program at UC San Diego. Qualified students are able to obtain the MS within one year following receipt of the BS. Students interested in applying to this program should meet with the BS/MS adviser in the Biology Student and Instructional Services Office before the end of their junior year.

The program is open only to undergraduate students in the UC San Diego School of Biological Sciences and the Ecology, Behavior, and Evolution major in the interdisciplinary Environmental Systems Program. The School of Biological Sciences does not have financial aid available for students enrolled in this program. Students participating in the master’s program may apply to serve as an instructional assistant. For details, deadlines, and other information, please visit the biological sciences instructional assistants web page.

Eligibility and Enrollment

To be eligible, students must have completed the first two quarters of their junior year in residence at UC San Diego and must have an overall UC GPA of at least 3.0. Students’ major GPA should be at least 3.3. Students must demonstrate excellent performance in upper-division biology core courses during their undergraduate program to be eligible to enroll in biology graduate core courses.

It is the responsibility of the prospective BS/MS student to select a faculty member who would be willing to serve as the student’s adviser and in whose laboratory the student would complete at least twenty-four units of research over a two-year period. The units of research that must be completed during the student’s senior undergraduate year must be taken in addition to the requirements for the bachelor’s degree. These units will count toward the requirements for the master’s degree only. Students must complete six consecutive quarters of research to fulfill the research component of the program. Any deviation from this plan, such as a break in enrollment for one or more quarters, will be cause for the student to be dropped from the program.

Students who have been approved (by both the School of Biological Sciences and the UC San Diego Office of Graduate Admissions) for the program must enroll in a Special Studies Course, BISP 196 or BISP 199 (senior year) and BGGN 271 (graduate year only), for each and every quarter of participation in the BS/MS program. Students can obtain the appropriate course code and departmental authorization at the Biology Student and Instructional Services Office.

Only research work completed while a registered and enrolled student will be credited toward the BS/MS program requirements.

Requirements for the Master of Science

Completion of six consecutive quarters of research with the same mentor during the senior undergraduate year and the graduate period.
Completion of at least thirty-six units of graduate course work (BGGN 200-level or higher, or approved [via petition] graduate courses offered by related departments at a similar level) during the graduate year. The course of study must be approved by the faculty adviser.
Twelve of the thirty-six units must be in courses other than BGGN 271. (BGGN 297 and BGGN 299 may not be used to satisfy this requirement.) No more than four units of undergraduate upper-division courses can be applied toward the twelve units of master’s-level course work.
Maintenance of a grade point average of at least 3.0 for all course work, both cumulatively and for each quarter of enrollment in the BS/MS program. If the student’s GPA falls below 3.0 (for either overall or in the major), the student will be automatically dropped from the program.
Completion of a thesis, with an oral presentation to, and approval of, a three-member thesis committee. The faculty research adviser serves as the thesis committee chair, and must have an eligible faculty title at UC San Diego with a research focus in biological sciences. The thesis committee must contain at least two Academic Senate faculty from the School of Biological Sciences, only one of whom may be a teaching professor; no more than one adjunct faculty can serve on the committee. If an adjunct faculty serves as chair of the thesis committee, one ladder-rank biology faculty member must serve as cochair.
At least three complete and consecutive quarters of residency must be completed as a registered graduate student. These quarters will commence with the quarter immediately following the quarter in which the BS is awarded. (Note: The summer session is not considered an official quarter during the graduate year.)
Students who have been admitted to the master’s portion of the BS/MS program must provide the Office of Graduate Admissions with a copy of their official UC San Diego transcripts, with the bachelor’s degree posted, by the deadline provided by the Office of Graduate Admissions.

Directed Research Track

Students interested in a directed research course of study may apply to the directed research track. The program is open only to UC San Diego biological sciences undergraduates. The School of Biological Sciences does not have financial aid available for students enrolled in this program. Students participating in the master’s program may apply to serve as an instructional assistant. For more information, please visit the biological sciences web page.

Eligibility and Enrollment

Students who have been approved (by both the School of Biological Sciences and the UC San Diego Office of Graduate Admissions) for the program must enroll in specific courses as described below.

Requirements for the Master of Science

Completion of at least thirty-six units of graduate course work as described below during the graduate year.
Maintenance of a grade point average of at least 3.0 for all course work, both cumulatively and for each quarter of enrollment in the BS/MS program. If the student’s GPA falls below 3.0 (for either overall or in the major), the student will be automatically dropped from the program.
Completion of a thesis with an oral presentation to, and approval of, a three-member thesis committee. The faculty research adviser serves as the thesis committee chair, and must have an eligible faculty title at UC San Diego with a research focus in biological sciences. The thesis committee must contain at least two Academic Senate faculty from the School of Biological Sciences, only one of whom may be a teaching professor; no more than one adjunct faculty can serve on the committee. If an adjunct faculty serves as chair of the thesis committee, one ladder-rank biology faculty member must serve as cochair. It is anticipated that the thesis committee will be comprised of faculty teaching the required courses, although students may identify alternate faculty should they desire.
At least three complete and consecutive quarters of residency must be completed as a registered graduate student. (Note: The summer session is not considered an official quarter during the graduate year.)
Students who have been admitted to the master’s portion of the BS/MS program must provide the Office of Graduate Admissions with a copy of their official UC San Diego transcripts, with the bachelor’s degree posted, by the deadline provided by the Office of Graduate Admissions.

Required Courses

Students in the directed research track are required to take the following courses for a letter grade.

Fall	Winter	Spring
BGGN 275. Lab Methodology—4 units	BGGN 275. Lab Methodology—4 units	BGGN 275. Lab Methodology—4 units
BGGN 276. Lab Analysis—4 units	BGGN 276. Lab Analysis—4 units	BGGN 276. Lab Analysis—4 units
BGGN 295. Scientific Presentation in Biology—4 units	BGGN 293. Scientific Writing in Biology—4 units	BGGN 293. Scientific Writing in Biology—4 units

Specialization in Biology Education Research

Students who are interested in research questions that relate to teaching and learning of biology may choose to complete a specialization in biology education research. Students pursuing this specialization conduct research that contributes a new knowledge or attempts to solve a particular problem in biology education, with the goal to enhance faculty teaching and student learning. This research encompasses topics such as: how students learn concepts in biology, what misconceptions impede their learning, and how instructors’ teaching methods influence student learning.

The program is open only to UC San Diego biological sciences undergraduates. The School of Biological Sciences does not have financial aid available for students enrolled in this program. Students participating in the master’s program may apply to serve as an instructional assistant. For more information, please visit the biological sciences web page.

Eligibility and Enrollment

It is the responsibility of the prospective BS/MS student to select a faculty member who would be willing to serve as the student’s adviser and supervise at least twenty-four units of research over a two-year period, between the BS and MS portions of the program. The units of research that must be completed during the student’s senior undergraduate year must be taken in addition to the requirements for the bachelor’s degree. These units will count toward the requirements for the master’s degree only. Students must complete six consecutive quarters of research to fulfill the research component of the program. Any deviation from this plan, such as a break in enrollment for one or more quarters, will be cause for the student to be dropped from the program.

Only research work completed while a registered and enrolled student will be credited toward the BS/MS specialization in biology education research program requirements.

Requirements for the Master of Science, Specialization in Biology Education Research

Completion of six consecutive quarters of research with the same mentor during the senior undergraduate year and the graduate period.
Completion of at least thirty-six units of graduate course work (BGGN 200-level or higher, or approved [via petition] graduate courses offered by related departments at a similar level) during the graduate year. The course of study must be approved by the faculty adviser.
Twelve of the thirty-six units must be in courses other than BGGN 271, and must include BGGN 272. See additional recommended courses below. BGGN 297 and BGGN 299 may not be used to satisfy this requirement. No more than four units of undergraduate upper-division courses can be applied toward the twelve units of master’s-level course work.
Maintenance of a grade point average of at least 3.0 for all course work, both cumulatively and for each quarter of enrollment in the BS/MS program. If the student’s GPA falls below 3.0, they will be automatically dropped from the program.
The adviser or committee chair may be a teaching professor in the School of Biological Sciences, or in other UC San Diego departments, who has been approved for this role by the Academic Senate. The thesis committee must contain at least two Academic Senate faculty from the School of Biological Sciences; no more than one adjunct faculty can serve on the committee.
At least three complete and consecutive quarters of residency must be completed as a registered graduate student. These quarters will commence with the quarter immediately following the quarter in which the BS is awarded. (Note: The summer session is not considered an official quarter during the graduate year.)
Students who have been admitted to the master’s portion of the BS/MS program must provide the Office of Graduate Admissions with a copy of their official UC San Diego transcripts, with the bachelor’s degree posted, by the deadline provided by the Office of Graduate Admissions.

Required Course

BGGN 272. Learning Theories. Students enrolled in the biology education research specialization are required to take this course for a letter grade.

Recommended Courses

Students enrolled in this specialization will be encouraged to enroll in at least one of the following courses of this specialization. As in the existing contiguous BS/MS program, no more than four units of undergraduate upper-division courses can be applied toward the twelve units of master’s-level course work.

EDS 102. Introduction to Qualitative Methods in Education Research (4)

EDS 103. Introduction to Quantitative Analysis in Education Research (4)

BGJC 215. Journal Club in Biology Education Research (1)

Recommended Courses that are Shared with the Biology Contiguous BS/MS Program

Recommended, but not required, for the biology contiguous BS/MS program students and for the students in the specialization in biology education research.

BGGN 202. Professional Development for Biologists (2)

BGGN 211. Experimental Approaches and Methods in Modern Biology (4)

BGGN 293. Scientific Writing in Biology (4)

BGGN 295. Scientific Presentation in Biology (4)

BGGN 500. Introduction to College Biology Education (4)

The Doctoral Program

Graduate studies for a PhD in the School of Biological Sciences in affiliation with the Salk Institute for Biological Studies are oriented mainly toward the development of the capacity for independent research and for teaching in the biological sciences.

The requirements for entrance to graduate study in the School of Biological Sciences are flexible, but a strong background in mathematics, chemistry, and physics is recommended.

Formal course work and opportunities for dissertation research include most basic areas of experimental biology, with emphasis in the general areas of biochemistry, biophysics, cancer biology, cell biology, conservation, developmental biology, ecology, behavior, and evolution, genetics, immunology, molecular biology, neurobiology, plant molecular biology, plant systems biology, quantitative biology, signal transduction, systems biology, and virology.

During the first year of graduate study, each student undertakes a small research project under direct supervision of the principal investigator and laboratory research staff in the laboratory of each of four to six different faculty members and is expected to spend a major portion of his or her academic time gaining new knowledge and training. The laboratories are selected by the student in consultation with the first-year adviser to provide a broad view of the research interests of the school. The student is also expected to enroll in the first-year graduate biology sequence, which includes a “boot camp” that helps develop fundamental lab skills in biology, as well as courses on bioinformatics, biostatistics, and methods and logic in biological sciences. Students are also required to complete three teaching assistantships. Development of teaching skills is a key goal for students in our doctoral program. Doctoral students must receive a satisfactory evaluation from all instructors in whose courses they serve as IAs. This part of our program aims to prepare doctoral students for future careers that involve teaching and mentoring.

A program of further study, including seminars and courses appropriate to a student’s background and interests, is arranged through consultation between the student and the faculty. Much reliance is placed on informal instruction through early and close association of the student with the faculty and research staff, and through regular seminars. After becoming familiar with the research activities of the faculty through the laboratory rotation program, the student begins work on a thesis research problem of his or her choice no later than the end of the first year. The student is free to choose, for the thesis adviser, a regular member of the UC San Diego faculty or an adjunct member of the School of Biological Sciences faculty. The student is required to have completed a two-part examination in order to be admitted to candidacy for the PhD. The purpose of the examinations is for the student to demonstrate competence in the field of major interest and in related fields of biology. The major remaining requirement for the PhD is the satisfactory completion of a dissertation consisting of original research carried out under the guidance of a faculty member.

Interdisciplinary collaboration through strong partnerships with other campus units and programs is a vital and stimulating aspect of the biological sciences program.

School PhD Time Limit Policies

Students must be advanced to candidacy by the end of four years. Total university support cannot exceed seven years. Total registered time at UC San Diego cannot exceed seven years.

Joint Doctoral Program with San Diego State University

The School of Biological Sciences at UC San Diego participates in a joint graduate program with the Department of Biology at San Diego State University, primarily in the areas of cell and molecular biology, and leading to the PhD in biology. Graduate student participants in the joint doctoral program are required to spend one year enrolled at UC San Diego.

Information regarding admission is found in the current edition of the San Diego State University Graduate Bulletin.

Specialization in Anthropogeny

http://carta.anthropogeny.org/training/specialization-track

A transdisciplinary graduate specialization in anthropogeny is available for doctoral students in the School of Biological Sciences. The aim of the specialization is to provide graduate students the opportunity to specialize their research and education in addressing the origins of the human phenomenon. The student’s research will be related to one of the oldest questions known to humankind, namely, the origins of humans and humanity. This specialization is not a stand-alone program, but will provide graduate students the opportunity to interact and communicate with peers in radically different disciplines throughout the duration of their PhD projects. Such communication across disciplines from the outset is key to fostering a capacity for interdisciplinary language skills and conceptual flexibility.

Admission to the Specialization

Students are admitted into the School of Biological Sciences doctoral program. During the early stages of their program, currently enrolled biology students with an interest in human origins are eligible to apply for admission to the specialization in anthropogeny. Selected applicants will have the opportunity to enroll in the specialization.

Specialization Requirements

Students pursuing this specialization must satisfy the requirements of both the biology doctoral program and the specialization in anthropogeny. For the anthropogeny specialization, students will be required to take a series of courses and participate in research rounds over four years of study. It is advised that students begin their course work in their second year.

Course work: Introduction to Anthropogeny (BIOM 225) and Advanced Anthropogeny (BIOM 229) are each taken once, in the winter and spring of the students’ second year. Current Topics in Anthropogeny (BIOM 218) is to be taken for six quarters (twice per academic year).
Research Rounds: Monthly seminars during which all participating students talk about their respective research.

Degree Requirements (Qualifying Examination, Dissertation)

Biological sciences students in the anthropogeny specialization must meet the departmental requirement for advancement to candidacy. In addition, students must meet internal deadlines, mentoring provisions, and proposal standards of the anthropogeny specialization track.

PhD students must complete a dissertation, which meets all requirements of the biological sciences program. In addition, it is expected that the PhD dissertation is broadly related to human origins and will be interdisciplinary in nature.

Time Limits

Students admitted to the specialization in anthropogeny must meet the time limit requirements as all other doctoral students in the School of Biological Sciences. It is expected that students will retain the same time to degree as students not pursuing this specialization. Additional course load consists only of two regular courses (two quarters, twenty lectures each). The third proposed course takes place only three times a year, from Friday noon to Saturday evening.

Specialization in Multiscale Biology

http://interfaces.ucsd.edu/

The UC San Diego campus offers a PhD specialization in Multiscale Biology available to doctoral candidates in participating programs spanning four schools: Biological Sciences, Physical Sciences, Jacobs School of Engineering, and Health Sciences at UC San Diego.

The PhD specialization is designed to allow students to obtain standard basic training in their chosen field within the biological sciences, physical sciences, engineering, and health sciences with training in integrative and quantitative analysis across multiple scales of biological organization from molecule to organism in health and disease into their graduate studies. It trains a new cadre of PhD scientists and provides a unique interdisciplinary education at the interfaces between the biological, medical, physical, and engineering sciences.

The specific objectives of this program are

Focused collaboration across nine graduate degree programs at UC San Diego to train a new generation of cross-disciplinary scientists
State-of-the-art interdisciplinary training through a new technology-centered hands-on graduate laboratory course curriculum
Novel emphasis on research aimed at integrative and quantitative analysis across multiple scales of biological organization from molecule to organism in health and disease

Prospective students must apply and be admitted into the PhD program in biological sciences described previously. (For more information, see the Biological Sciences Graduate Program and/or the Interfaces Graduate Training Program.)

Specialization in Quantitative Biology

A specialization in Quantitative Biology (Q-Bio) spanning four schools—Biological Sciences, Physical Sciences, Jacobs School of Engineering, and Health Sciences—is available to doctoral candidates in the School of Biological Sciences. This PhD specialization is designed to train students to develop and apply quantitative theoretical and experimental approaches to studying fundamental principles of living systems. The core of this specialization comprises one year of theory courses and one year of lab courses.

Admission to the Specialization and Course Requirements

Prospective students should apply to and are admitted into the School of Biological Sciences doctoral program. Admitted students must complete the core sequence within Biological Sciences. In addition, they must complete two additional Q-Bio courses and a one-year laboratory course sequence during their first two years in the specialization. Students will complete laboratory rotations during their first year. For more information students should contact the Biological Sciences’ Graduate Student and Instructional Services Office.

Specialization in Interdisciplinary Environmental Research

A graduate specialization in Interdisciplinary Environmental Research (PIER) is available for select doctoral students in biology. PIER students seek solutions to today’s environmental challenges.

The PhD specialization is designed to allow students to obtain standard training in their chosen field and an opportunity to interact with peers in different disciplines throughout the duration of their doctoral projects. Such communication across disciplines is key to fostering a capacity for interdisciplinary “language” skills and conceptual flexibility.

Specialization Requirements

Complete all course work, dissertation, and other requirements of the biological science doctorate
16-unit interdisciplinary boot camp (summer, SIO 295S–295LS)
8 units from a secondary field (outside the home department)
6 units (3 quarters) Interdisciplinary Environmental Research Forum (SIO 296)
At least one chapter of the dissertation will be broadly related to environmental research and will be interdisciplinary in nature

Application Requirements

We advise students to begin PIER in their second year upon completion of core biology course requirements.

The following items should be combined into a single PDF document and submitted to cmbc@ucsd.edu.

Student’s CV
Half-page abstract of proposed thesis work
Up to one-page statement of student’s interest in interdisciplinary environmental research including career goals
Nomination letter from adviser acknowledging student’s academic ability and interdisciplinary environmental interest. The letter must include a commitment for summer stipend support

Admission to the Specialization

Students are admitted into the biological sciences doctoral program. Admission to PIER is a competitive process with six to eight students granted admission each year from across ten participating UC San Diego departments. Selected applicants will have the opportunity to enroll in the specialization.

PIER Fellowships

When funding is available, all applicants will be considered for one year of PIER Fellowship support.

Specialization in Immunology

A graduate specialization in immunology is offered as part of graduate training in the biomedical sciences (BMS) and School of Biological Sciences (BioSci) graduate programs. Students accepted to the biological sciences (BioSci) graduate program will satisfy all of the degree requirements of that program. In addition, the specialization will promote an immersive educational experience in immunology that includes participation in immunology course work, seminars given by renowned speakers, biweekly research presentations by peers, a weekly journal club, and a yearly area-wide immunology conference.

Admission to the Specialization and Course Requirements

Students admitted to the BioSci program may enroll in the specialization in immunology after entering the program or after the first year with rotations complete. Admitted students will have satisfied the requirements for admission specified for the BioSci program. Also, we expect students in graduate studies with a specialization in immunology to have completed an undergraduate course in the field or the equivalent before enrolling in the specialization.

Application Requirements

Prospective students should apply to and are admitted into the School of Biological Sciences doctoral program and can choose the specialization in immunology by notifying the immunology specialization program administrator upon admission or at any time up to completing their rotations and choosing a lab for thesis research.

The following items should be combined into a single PDF document and submitted to the program administrator (immunology@ucsd.edu):

Student’s CV or unofficial transcript with proof of undergraduate course work in immunology**
Up to one-page statement of student’s interest in interdisciplinary immunology research including career goals
Nomination letter from adviser acknowledging student’s academic ability and immunology interest

**For matriculation in the specialization, students just starting in the BioSci graduate program should have taken the equivalent of at least one undergraduate course in immunology. Those otherwise qualified students who have not taken an undergraduate course in immunology can fulfill this requirement by taking the week-long American Association of Immunologists introductory course in immunology, presently held during the summer at the UCLA campus. Students can also fulfill this requirement by taking an upper-division summer course in immunology at any accredited college or university. Students enrolling in the specialization during or after their rotations can satisfy the requirement by completing graduate course work in immunology. The program administrator will work with admitted students to make sure they fulfill this requirement.

Specialization Requirements

Complete all course work and other requirements for the biological science doctorate
Completion of at least three approved immunology elective courses, for example: BGGN 225. Graduate Immunology; BIOM 253. Pathogens and Host Defense; BGGN 232. Innate Immunity; or BGGN 239. Bioinformatics for Immunologists
Thesis research must be completed in an approved immunology laboratory

Time Limits

Students admitted to the specialization in immunology must meet the time limit requirements as all other doctoral students in the School of Biological Sciences. It is expected that students will retain the same time to degree as students not pursuing this specialization.